dChip: Selected Applications

 

Papers citing Li and Wong 2001 (1177+)

Papers citing Lin et al. 2004 (90+)

 

Bioinformatics project using dChip

Porro I, Torterolo L, Corradi L, Fato M, Papadimitropoulos A, Scaglione S, Schenone A, Viti F. A Grid-based solution for management and analysis of microarrays in distributed experiments. BMC Bioinformatics. 2007 Mar 8;8 Suppl 1:S7. (dChip Linux porting)

 

Cancer genome analysis using SNP arrays

 

Mullighan CG, Miller CB, Radtke I, Phillips LA, Dalton J, Ma J, White D, Hughes TP, Le Beau MM, Pui CH, Relling MV, Shurtleff SA, Downing JR.

BCR-ABL1 lymphoblastic leukaemia is characterized by the deletion of Ikaros. Nature. 2008; 453(7191):110-4.

 

Weir BA et al. Characterizing the cancer genome in lung adenocarcinoma. Nature. 2007; 450(7171):893-8.

 

Mullighan CG, Goorha S, Radtke I, Miller CB, Coustan-Smith E, Dalton JD, Girtman K, Mathew S, Ma J, Pounds SB, Su X, Pui CH, Relling MV, Evans WE, Shurtleff SA, Downing JR. Genome-wide analysis of genetic alterations in acute lymphoblastic leukaemia. Nature. 2007; 446(7137):758-64.

 

Garraway LA, Widlund HR, Rubin MA, Getz G, Berger AJ, Ramaswamy S, Beroukhim R, Milner DA, Granter SR, Du J, Lee C, Wagner SN, Li C, Golub TR, Rimm DL, Meyerson ML, Fisher DE, Sellers WR (2005) Integrative genomic analyses identify MITF as a lineage survival oncogene amplified in malignant melanoma. Nature. 436(7047):117-22. (PubMed, GEO data)

 

Autism Genome Project Consortium, et al. Mapping autism risk loci using genetic linkage and chromosomal rearrangements. Nat Genet. 2007; 39(3):319-28.

 

Expression array analysis

 

Lu T, Pan Y, Kao SY, Li C, Kohane I, Chan J, Yankner BA (2004) Gene regulation and DNA damage in the ageing human brain. Nature. 429, 883–891. (PubMed, Supplement, GEO data, dChip usage)

 

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